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    • Several versions

    Differential Binding of Tenofovir and Adefovir to Reverse Transcriptase of Hepatitis B Virus

    Van Hemert, Formijn J, Berkhout, Ben, Zaaijer, Hans L
    PLoS ONE, 2014, Vol.9(9) [Peer Reviewed Journal]

    • Several versions

    The Hepatitis B Virus X Protein Inhibits Thymine DNA Glycosylase Initiated Base Excision Repair (Inhibition of BER by the HBV Protein X)

    van de Klundert, Maarten A. A, van Hemert, Formijn J, Zaaijer, Hans L, Kootstra, Neeltje A
    2012, Vol.7(11), p.e48940 [Peer Reviewed Journal]

    • Several versions

    Protein X of Hepatitis B Virus: Origin and Structure Similarity with the Central Domain of DNA Glycosylase (3D-Structure Similarity of HBx with DNA Glycosylase)

    van Hemert, Formijn J, van de Klundert, Maarten A. A, Lukashov, Vladimir V, Kootstra, Neeltje A, Berkhout, Ben, Zaaijer, Hans L
    PLoS ONE, 2011, Vol.6(8), p.e23392 [Peer Reviewed Journal]

    • Several versions

    The A-nucleotide preference of HIV-1 in the context of its structured RNA genome

    van Hemert, Formijn J, van Der Kuyl, Antoinette C, Berkhout, Ben
    RNA biology, 01 February 2013, Vol.10(2), pp.211-215 [Peer Reviewed Journal]

    • Several versions

    Identification of a new genotype of Torque Teno Mini virus

    Jazaeri Farsani, Seyed Mohammad, Jebbink, Maarten F, Deijs, Martin, Canuti, Marta, Van Dort, Karel A, Bakker, Margreet, Grady, Bart P X, Prins, Maria, Van Hemert, Formijn J, Kootstra, Neeltje A, Van Der Hoek, Lia
    Virology journal, 30 October 2013, Vol.10, pp.323 [Peer Reviewed Journal]

    • Several versions

    A Novel Astrovirus-Like RNA Virus Detected in Human Stool

    Oude Munnink, Bas B, Cotten, Matthew, Canuti, Marta, Deijs, Martin, Jebbink, Maarten F, Van Hemert, Formijn J, Phan, My V T, Bakker, Margreet, Jazaeri Farsani, Seyed Mohammad, Kellam, Paul, Van Der Hoek, Lia
    Virus evolution, January 2016, Vol.2(1), pp.vew005 [Peer Reviewed Journal]

    • Several versions

    Unexplained diarrhoea in HIV-1 infected individuals

    Oude Munnink, Bas B, Canuti, Marta, Deijs, Martin, De Vries, Michel, Jebbink, Maarten F, Rebers, Sjoerd, Molenkamp, Richard, Van Hemert, Formijn J, Chung, Kevin, Cotten, Matthew, Snijders, Fransje, Sol, Cees Ja, Van Der Hoek, Lia
    BMC Infectious Diseases, 2014, Vol.14, p.22-22 [Peer Reviewed Journal]

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    Host-related nucleotide composition and codon usage as driving forces in the recent evolution of the Astroviridae

    Van Hemert, Formijn J, Berkhout, Ben, Lukashov, Vladimir V
    Virology, 10 May 2007, Vol.361(2), pp.447-54 [Peer Reviewed Journal]
    MEDLINE/PubMed (U.S. National Library of Medicine)
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    Title: Host-related nucleotide composition and codon usage as driving forces in the recent evolution of the Astroviridae
    Author: Van Hemert, Formijn J; Berkhout, Ben; Lukashov, Vladimir V
    Subject: Astroviridae -- Genetics
    Description: The evolutionary history of the Astroviridae comprises the ancient separation between avian and mammalian astrovirus lineages followed by diversification among mammalian astroviruses. The latter process included several cross-species transmissions. We found that the recent, but not the ancient, evolution of astroviruses was associated with a switch in nucleotide composition and codon usage among non-human mammalian versus human/avian astroviruses. Virus and hosts phylogenies based on codon usage agreed with each other and matched the hosts' evolutionary emergence order. This recent switch in driving forces acting at the synonymous level points to the adaptation of codon usage by viruses to that of their hosts after cross-species transmissions. This is the first demonstration of nucleotide composition and codon usage being active driving forces during the recent evolutionary history of a virus group in the host-parasite system.
    Is part of: Virology, 10 May 2007, Vol.361(2), pp.447-54
    Identifier: 0042-6822 (ISSN); 17188318 Version (PMID)

    • Several versions

    Different rates of (non-)synonymous mutations in astrovirus genes; correlation with gene function

    Berkhout Ben, Lukashov Vladimir V, van Hemert Formijn J
    Virology journal, 01 March 2007, Vol.4(1), p.25 [Peer Reviewed Journal]

    • Several versions

    Rooting human parechovirus evolution in time

    Benschop Kimberley, van Hemert Formijn J, de Vries Michel, Faria Nuno R, van Der Hoek Lia
    BMC evolutionary biology, 01 July 2009, Vol.9(1), p.164 [Peer Reviewed Journal]